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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24246938_24288504_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24246938 - 24288504
Intron Length:
41567

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
TCTATCTTACCT
Flanking Amino Acid:
YSFQMALTSVVVTLWYRAPE
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
84
27.9
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
92.5
0.96
0.7
87.5
30
Minor 5ss
44.9
-0.5
2.8
58.5
40.5
Minor BPS
64.5
0.53
1.7
79.88
42.3

Associated Gene:

Gene:
CDK6
Ensembl Gene ID:
ENSAPLG00000009363
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034674
24207738 - 24341259
133522
ENSAPLT00000009761
24214852 - 24341259
126408