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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2431627_2431743_R

Intron Information:

Intron Rank:
149905
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
2431627 - 2431743
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATCAAAT
5'SS Class:
weak_major
3'SS Sequence:
TTCCTTTATGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTAAT
U12 Branch Point Sequence:
TTTTCCTTTATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.2
66
39.2
Major BPS
69
0.47
1.2
69.9
35.3
Major PPT
80
0.68
0.8
77.2
30.4
Minor 5ss
46.9
-0.3
2.7
63
43.6
Minor BPS
74.4
0.62
1.6
79.54
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028210
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046747
2431625 - 2432532
908