About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24443634_24446955_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24443634 - 24446955
Intron Length:
3322

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TGTTCTTTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
TTGTGTACAACT
Flanking Amino Acid:
EQQQQQQDHQQCI*
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.3
32.1
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
79.8
0.67
0.8
73.3
37.1
Minor 5ss
41.7
-0.9
2.8
54.7
43.6
Minor BPS
47.4
-0.1
2.2
72.86
44.1

Associated Gene:

Gene:
HEPACAM2
Ensembl Gene ID:
ENSAPLG00000009516
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009906
24443624 - 24469271
25648