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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24449771_24450411_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24449771 - 24450411
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTA
5'SS Class:
major
3'SS Sequence:
ATTTTAACTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCATTTTAACT
Flanking Amino Acid:
ADYKKAQTFSGHESALDDFG
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.5
39.9
Major BPS
100
1.24
0.5
100
0
Major PPT
79.6
0.67
0.9
76.1
37.4
Minor 5ss
34.4
-1.8
3.4
47.6
47.8
Minor BPS
73.3
0.81
1.2
83.78
37.4

Associated Gene:

Gene:
HEPACAM2
Ensembl Gene ID:
ENSAPLG00000009516
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009906
24443624 - 24469271
25648