Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24450601_24450686_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24450601 - 24450686

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGTAAA

5'SS Class:

strong_major

3'SS Sequence:

CTCTTCTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACATAAA

U12 Branch Point Sequence:

TAAAGAATGATT

Flanking Amino Acid:

FVWKRYQPHKVIRQKLQSRP

Intron Amino Acid Position:

377

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.8

0.94

0.8

26.2

Major BPS

57.2

0.18

1.1

58.3

34.3

Major PPT

89.4

0.89

0.6

87.7

22.4

Minor 5ss

41.1

-1

2.5

50.4

46.1

Minor BPS

39.4

-0.7

2.1

55.76

Associated Gene:

Gene:

HEPACAM2

Ensembl Gene ID:

ENSAPLG00000009516

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009906

24443624 - 24469271

25648

ENSAPLT00000037558

24449697 - 24469271

19575