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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24472860_24474765_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24472860 - 24474765
Intron Length:
1906

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
AATTCTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TCAACCTTAACT
Flanking Amino Acid:
QKIKSLMARQGLRSPQESVH
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.6
41.7
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
71.7
0.49
1.1
71.5
37.7
Minor 5ss
24.7
-2.9
3
28.6
43.8
Minor BPS
79.1
0.99
1.2
85.9
39.9

Associated Gene:

Gene:
VPS50
Ensembl Gene ID:
ENSAPLG00000009583
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024313
24472052 - 24547308
75257