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Intron Name: Anas_platyrhynchos_platyrhynchos_2_24482834_24483445_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24482834 - 24483445

Intron Length:

612

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

TGTTCACATTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTTAT

U12 Branch Point Sequence:

TCTCACTGAATT

Flanking Amino Acid:

SFDIVKYELERLPPVLSLQE

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.5

1.1

0.7

87.9

29.3

Major BPS

87.7

0.94

0.8

77.7

36.7

Major PPT

74.7

0.56

71.4

38.8

Minor 5ss

41.9

-0.9

2.9

58.7

45.8

Minor BPS

58.4

0.34

1.7

75.59

40.9

Associated Gene:

Gene:

VPS50

Ensembl Gene ID:

ENSAPLG00000009583

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024313

24472052 - 24547308

75257

ENSAPLT00000010103

24473835 - 24547308

73474