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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24486916_24489179_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24486916 - 24489179
Intron Length:
2264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
ATTTACTTAACC
Flanking Amino Acid:
ILEKQPAYVEELERVTSLQT
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
85.5
0.8
0.6
81.7
23.2
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
80.5
0.94
1.3
86.29
30.4

Associated Gene:

Gene:
VPS50
Ensembl Gene ID:
ENSAPLG00000009583
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024313
24472052 - 24547308
75257
ENSAPLT00000010103
24473835 - 24547308
73474