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Intron Name: Anas_platyrhynchos_platyrhynchos_2_24490335_24490415_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24490335 - 24490415

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTCTCTTTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTCAT

U12 Branch Point Sequence:

TTGTAGTTATCA

Flanking Amino Acid:

LKSLRTIKTLQRTDVRLSEM

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.9

0.75

0.9

77.7

31.7

Major BPS

100

1.24

0.5

100

Major PPT

89.5

0.89

0.6

20.1

Minor 5ss

41.3

-1

2.5

47.2

43.7

Minor BPS

-0.1

2.4

68.06

44.3

Associated Gene:

Gene:

VPS50

Ensembl Gene ID:

ENSAPLG00000009583

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024313

24472052 - 24547308

75257

ENSAPLT00000010103

24473835 - 24547308

73474