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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24493134_24497903_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24493134 - 24497903
Intron Length:
4770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTCTTTCATT
Flanking Amino Acid:
ASTFKHYSCISELNSKLQDT
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.2
0.72
0.7
76.9
30.7
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
73.9
0.83
1.6
91.31
32.6

Associated Gene:

Gene:
VPS50
Ensembl Gene ID:
ENSAPLG00000009583
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024313
24472052 - 24547308
75257
ENSAPLT00000010103
24473835 - 24547308
73474