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Intron Name: Anas_platyrhynchos_platyrhynchos_2_24500873_24503288_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24500873 - 24503288

Intron Length:

2416

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGTATT

5'SS Class:

strong_major

3'SS Sequence:

CCTTTTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTTAC

U12 Branch Point Sequence:

TACTGTTTGATT

Flanking Amino Acid:

QAYRLLGKTQTAMDQLHMHF

Intron Amino Acid Position:

267

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

Major BPS

77.8

0.69

0.9

69.4

37.3

Major PPT

89.8

0.89

0.6

Minor 5ss

-1.4

2.8

51.9

44.6

Minor BPS

0.24

1.8

70.96

Associated Gene:

Gene:

VPS50

Ensembl Gene ID:

ENSAPLG00000009583

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010103

24473835 - 24547308

73474

ENSAPLT00000024313

24472052 - 24547308

75257