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Intron Name: Anas_platyrhynchos_platyrhynchos_2_24503430_24504280_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24503430 - 24504280

Intron Length:

851

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTATGTGAT

5'SS Class:

major

3'SS Sequence:

TGTTTTTCTATAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATATTAT

U12 Branch Point Sequence:

AGTTTCACAATA

Flanking Amino Acid:

QKLQYKDLCTHITSDSYIPC

Intron Amino Acid Position:

314

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.71

74.4

35.9

Major BPS

75.9

0.64

66.1

40.5

Major PPT

85.1

0.79

0.7

80.9

31.3

Minor 5ss

40.9

-1

3.2

57.9

46.7

Minor BPS

49.5

-0

1.8

63.69

36.3

Associated Gene:

Gene:

VPS50

Ensembl Gene ID:

ENSAPLG00000009583

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010103

24473835 - 24547308

73474

ENSAPLT00000024313

24472052 - 24547308

75257