Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24504417_24509173_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24504417 - 24509173

Intron Length:

4757

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAATTAT

5'SS Class:

strong_major

3'SS Sequence:

CTTGCACCTTCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAG

U12 Branch Point Sequence:

ATATCTGTAACA

Flanking Amino Acid:

DQDETATVSSVSDGSNVIGT

Intron Amino Acid Position:

359

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

0.9

79.1

30.1

Major BPS

72.4

0.56

1.5

71.4

45.1

Major PPT

75.2

0.57

0.9

70.7

35.1

Minor 5ss

41.4

-1

54.6

Minor BPS

0.37

74.44

37.2

Associated Gene:

Gene:

VPS50

Ensembl Gene ID:

ENSAPLG00000009583

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024313

24472052 - 24547308

75257

ENSAPLT00000010103

24473835 - 24547308

73474