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Intron Name: Anas_platyrhynchos_platyrhynchos_2_24515076_24522287_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24515076 - 24522287

Intron Length:

7212

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTATGGAGT

5'SS Class:

major

3'SS Sequence:

GCTTGTTTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATAAAT

U12 Branch Point Sequence:

ATGGCAGTAATT

Flanking Amino Acid:

ETEDVLASNGYESDEQEKSA

Intron Amino Acid Position:

546

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.2

0.55

1.1

66.1

45.1

Major BPS

74.5

0.61

79.6

29.1

Major PPT

82.2

0.72

0.9

75.5

38.3

Minor 5ss

39.6

-1.2

3.2

48.4

47.5

Minor BPS

46.3

-0.2

2.3

67.02

44.2

Associated Gene:

Gene:

VPS50

Ensembl Gene ID:

ENSAPLG00000009583

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024313

24472052 - 24547308

75257

ENSAPLT00000010103

24473835 - 24547308

73474