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Intron Name: Anas_platyrhynchos_platyrhynchos_2_24522407_24523641_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24522407 - 24523641

Intron Length:

1235

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCGGTAGA

5'SS Class:

major

3'SS Sequence:

TTTTTCCTTTAAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGGTAT

U12 Branch Point Sequence:

TTTTCCTTTAAG

Flanking Amino Acid:

DEQTGDAPMKSVSRETLRSR

Intron Amino Acid Position:

585

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.5

0.51

1.3

68.9

43.8

Major BPS

56.4

0.16

1.6

57.4

49.1

Major PPT

0.74

0.9

87.8

22.9

Minor 5ss

29.1

-2.4

2.7

34.2

41.3

Minor BPS

68.6

0.44

1.8

77.1

39.8

Associated Gene:

Gene:

VPS50

Ensembl Gene ID:

ENSAPLG00000009583

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024313

24472052 - 24547308

75257

ENSAPLT00000010103

24473835 - 24547308

73474