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Intron Name: Anas_platyrhynchos_platyrhynchos_2_24523749_24528943_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24523749 - 24528943

Intron Length:

5195

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTACGTAGA

5'SS Class:

major

3'SS Sequence:

TTTAATTTTCAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

CTGTATTTAATT

Flanking Amino Acid:

NTTLNVVRLVGKYMQMMNIL

Intron Amino Acid Position:

621

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

70.9

40.9

Major BPS

90.7

1.01

0.7

19.9

Major PPT

0.54

1.1

71.9

42.6

Minor 5ss

34.2

-1.8

2.9

39.6

40.9

Minor BPS

0.55

1.5

76.19

41.2

Associated Gene:

Gene:

VPS50

Ensembl Gene ID:

ENSAPLG00000009583

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024313

24472052 - 24547308

75257

ENSAPLT00000010103

24473835 - 24547308

73474