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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24532618_24538665_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24532618 - 24538665
Intron Length:
6048

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
AATTCTTTATTT
Flanking Amino Acid:
NRIQESLIDLEVSADPAGTL
Intron Amino Acid Position:
689

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
80.6
31.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
86
0.81
0.7
85.7
27.3
Minor 5ss
37.1
-1.5
2.7
44.2
37.1
Minor BPS
66.7
0.6
1.5
79.34
37

Associated Gene:

Gene:
VPS50
Ensembl Gene ID:
ENSAPLG00000009583
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024313
24472052 - 24547308
75257
ENSAPLT00000010103
24473835 - 24547308
73474