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Intron Name: Anas_platyrhynchos_platyrhynchos_2_24538815_24539941_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24538815 - 24539941

Intron Length:

1127

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTAGGTTAT

5'SS Class:

major

3'SS Sequence:

TTTGTTTTCAAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

GTGAATTTAATT

Flanking Amino Acid:

LAERVVATESLVFLAEQFEF

Intron Amino Acid Position:

738

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.3

0.43

1.1

69.7

37.2

Major BPS

90.7

1.01

0.7

19.9

Major PPT

76.3

0.59

78.1

34.2

Minor 5ss

-0.8

3.2

63.1

Minor BPS

57.4

0.31

1.5

70.32

40.8

Associated Gene:

Gene:

VPS50

Ensembl Gene ID:

ENSAPLG00000009583

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024313

24472052 - 24547308

75257

ENSAPLT00000010103

24473835 - 24547308

73474