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Intron Name: Anas_platyrhynchos_platyrhynchos_2_24540354_24542712_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24540354 - 24542712

Intron Length:

2359

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAATACT

5'SS Class:

strong_major

3'SS Sequence:

CATGTTTCATCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAT

U12 Branch Point Sequence:

TCACCTTTCATG

Flanking Amino Acid:

HNVYVDALLKEFEEFNRRLN

Intron Amino Acid Position:

824

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.3

0.81

0.9

82.9

28.7

Major BPS

87.6

0.93

0.9

89.3

Major PPT

72.2

0.5

70.7

39.5

Minor 5ss

32.3

-2

2.8

43.2

43.8

Minor BPS

48.7

-0.2

1.8

52.99

42.5

Associated Gene:

Gene:

VPS50

Ensembl Gene ID:

ENSAPLG00000009583

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010103

24473835 - 24547308

73474

ENSAPLT00000024313

24472052 - 24547308

75257