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Intron Name: Anas_platyrhynchos_platyrhynchos_2_24542835_24544477_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24542835 - 24544477

Intron Length:

1643

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTAGT

5'SS Class:

strong_major

3'SS Sequence:

TTCCTCTTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TAATTGTTACTT

Flanking Amino Acid:

IRLANRTLVEGYANVKKCSN

Intron Amino Acid Position:

864

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.6

0.89

0.9

81.8

38.5

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

89.5

0.89

0.6

Minor 5ss

-1.5

2.8

43.2

43.8

Minor BPS

-0

2.2

69.11

42.3

Associated Gene:

Gene:

VPS50

Ensembl Gene ID:

ENSAPLG00000009583

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010103

24473835 - 24547308

73474

ENSAPLT00000024313

24472052 - 24547308

75257