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Intron Name: Anas_platyrhynchos_platyrhynchos_2_24544668_24547188_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

24544668 - 24547188

Intron Length:

2521

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGAGTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTATTTGCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTGCCATAACA

Flanking Amino Acid:

DMERWIKEHREYSTKHLTNL

Intron Amino Acid Position:

928

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.8

0.8

78.9

35.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

82.2

0.72

77.1

41.6

Minor 5ss

35.9

-1.6

3.6

48.1

47.5

Minor BPS

0.69

1.7

84.46

35.5

Associated Gene:

Gene:

VPS50

Ensembl Gene ID:

ENSAPLG00000009583

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024313

24472052 - 24547308

75257

ENSAPLT00000010103

24473835 - 24547308

73474