About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24592762_24600881_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24592762 - 24600881
Intron Length:
8120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTCTTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
ATGTCTTTAACA
Flanking Amino Acid:
ATIFCFFNGEVQGALKRQWT
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
74.5
0.55
1
70
39.7
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
80.8
0.96
1
81.55
33.8

Associated Gene:

Gene:
CALCR
Ensembl Gene ID:
ENSAPLG00000010377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010842
24591817 - 24697412
105596