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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24600924_24607156_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24600924 - 24607156
Intron Length:
6233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGATCTCTAAAT
Flanking Amino Acid:
YIMHILMHYQGLLVATIFCF
Intron Amino Acid Position:
415

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
84.2
29.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
89.3
0.88
0.6
88.9
20.3
Minor 5ss
40.8
-1
3.1
57.9
46.7
Minor BPS
57.9
0.33
1.8
76.06
39.8

Associated Gene:

Gene:
CALCR
Ensembl Gene ID:
ENSAPLG00000010377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010842
24591817 - 24697412
105596