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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24607376_24609534_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24607376 - 24609534
Intron Length:
2159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CTTTGCTTTACA
Flanking Amino Acid:
VHGPVMAALLVNFFFLLNIV
Intron Amino Acid Position:
342

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
82.6
29.6
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
86
0.81
0.8
79.7
32.4
Minor 5ss
37.2
-1.4
3
46.4
43
Minor BPS
60.2
0.32
2.1
75.18
42.3

Associated Gene:

Gene:
CALCR
Ensembl Gene ID:
ENSAPLG00000010377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010842
24591817 - 24697412
105596