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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24609602_24609701_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24609602 - 24609701
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTCGC
5'SS Class:
major
3'SS Sequence:
ATTTCCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
AATGCTCTAATG
Flanking Amino Acid:
AVARAKYFNDNCWMSVDTYL
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
66
40.1
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
83.5
0.75
0.8
74.4
35.8
Minor 5ss
30.8
-2.2
2.9
35.9
34.4
Minor BPS
49.1
-0.2
1.8
55.37
40.3

Associated Gene:

Gene:
CALCR
Ensembl Gene ID:
ENSAPLG00000010377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010842
24591817 - 24697412
105596