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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24609763_24614916_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24609763 - 24614916
Intron Length:
5154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TTAATTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
ATACCTTTAATT
Flanking Amino Acid:
RLHWYYLLGWGFPLVPASIH
Intron Amino Acid Position:
299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.4
41.9
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
79.8
0.67
1
77.2
41.6
Minor 5ss
45
-0.5
2.5
51.3
45.4
Minor BPS
72.8
0.79
1.1
80.82
34.5

Associated Gene:

Gene:
CALCR
Ensembl Gene ID:
ENSAPLG00000010377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010842
24591817 - 24697412
105596