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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24649718_24653394_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24649718 - 24653394
Intron Length:
3677

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTAAATGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTCCTTTAAAT
Flanking Amino Acid:
MNRAPPYRKKGLFCNRTWDG
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
74
36.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
71.8
0.49
1.1
62.7
47.1
Minor 5ss
32.2
-2
3
39.4
46.1
Minor BPS
73.3
0.81
1.3
85.47
33.9

Associated Gene:

Gene:
CALCR
Ensembl Gene ID:
ENSAPLG00000010377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010842
24591817 - 24697412
105596