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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24653549_24663403_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24653549 - 24663403
Intron Length:
9855

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
CCTTTCTGTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
GGTTTATTCACT
Flanking Amino Acid:
GCFLLIILLIRMVPSLTATV
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
70.1
40
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
80.4
0.68
0.9
75.4
33.1
Minor 5ss
38.6
-1.3
2.7
49.9
40.1
Minor BPS
52.4
0.16
2
74.45
41.9

Associated Gene:

Gene:
CALCR
Ensembl Gene ID:
ENSAPLG00000010377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010842
24591817 - 24697412
105596