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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24663492_24697228_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24663492 - 24697228
Intron Length:
33737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCAAA
5'SS Class:
major
3'SS Sequence:
CTTTAATTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGCTCTTTAATT
Flanking Amino Acid:
EWEDMETVHERRVSYNVSLQ
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
65.2
42.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
78.3
0.64
0.9
69.6
40.3
Minor 5ss
43.2
-0.7
3
57.3
47
Minor BPS
77.9
0.95
1.1
84.22
37.1

Associated Gene:

Gene:
CALCR
Ensembl Gene ID:
ENSAPLG00000010377
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010842
24591817 - 24697412
105596