Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24824564_24825644_R

Intron Information:

Intron Rank:

152630

Intron Class:

major

Intron Phase:

Intron Coordinates:

24824564 - 24825644

Intron Length:

1081

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

TATTGTATTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTAAT

U12 Branch Point Sequence:

ATTTCAGGAAGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.6

0.96

0.8

27.7

Major BPS

76.7

0.66

1.2

77.9

34.9

Major PPT

77.4

0.62

0.9

74.9

39.5

Minor 5ss

38.8

-1.3

3.4

43.6

Minor BPS

43.4

-0.5

2.5

62.94

42.2

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029714

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033361

24820090 - 24825805

5716