Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24870912_24873158_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

24870912 - 24873158

Intron Length:

2247

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTTTTTAAT

5'SS Class:

weak_major

3'SS Sequence:

ACACCAAACCCAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

AAATAAA

U12 Branch Point Sequence:

CTAGCCTTAGAA

Flanking Amino Acid:

CLPEKSNGCSNSFLKMIYLQ

Intron Amino Acid Position:

157

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

57.9

0.19

1.2

67.4

37.2

Major BPS

0.3

62.3

30.4

Major PPT

51.8

0.04

36.6

Minor 5ss

41.6

-0.9

2.5

52.7

38.1

Minor BPS

50.6

0.02

1.8

61.44

44.4

Associated Gene:

Gene:

TFPI2

Ensembl Gene ID:

ENSAPLG00000017562

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000048455

24870731 - 24873898

3168