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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24872292_24873185_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
24872292 - 24873185
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TCT|GCCAGAGAA
5'SS Class:
weak_major
3'SS Sequence:
CTATCTCATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
CCTATCTCATCT
Flanking Amino Acid:
QDLQSCVDHCLGNSTGIVIF
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.8
0.02
1.5
51.8
42
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
70.4
0.46
0.9
63
38.4
Minor 5ss
17.7
-3.7
3.8
30.9
42.5
Minor BPS
47.7
-0.1
1.9
64.12
46.2

Associated Gene:

Gene:
TFPI2
Ensembl Gene ID:
ENSAPLG00000017562
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017933
24871729 - 24874261
2533