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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24873329_24873399_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
24873329 - 24873399
Intron Length:
71

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAC|GCAAAGGGT
5'SS Class:
weak_major
3'SS Sequence:
GTGCCGGATGGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CCCAAAT
U12 Branch Point Sequence:
AGTGCCCAAATT
Flanking Amino Acid:
LHPPLLGTGNADGGPCRGHI
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56
0.14
2
67.9
40.3
Major BPS
52.4
0.06
1.1
58.8
34.5
Major PPT
44.6
-0.3
1.7
42.7
42.4
Minor 5ss
21.3
-3.3
4.3
35.9
41.9
Minor BPS
47.5
-0.1
2.1
67.67
43.3

Associated Gene:

Gene:
TFPI2
Ensembl Gene ID:
ENSAPLG00000017562
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048455
24870731 - 24873898
3168