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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24877726_24879941_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
24877726 - 24879941
Intron Length:
2216

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGGCAG
5'SS Class:
major
3'SS Sequence:
GTTCCCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCCAT
U12 Branch Point Sequence:
CTGGCCGTAGCA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
56.9
43.6
Major BPS
49.9
-0
1.4
61.8
44.5
Major PPT
79.2
0.66
0.8
69.9
36.6
Minor 5ss
25.1
-2.9
3.1
30.2
42.9
Minor BPS
45.5
-0.3
2.3
58.48
47.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010896
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011352
24877622 - 24966104
88483
Gene:
GNG11
Ensembl Gene ID:
ENSAPLG00000021155
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044232
24873441 - 24880165
6725