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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24880564_24896246_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
24880564 - 24896246
Intron Length:
15683

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
TTTTCAAATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TAACTTTTAATT
Flanking Amino Acid:
HGALRAALRKIIDREINPFV
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.3
0.5
0.9
64.8
40.6
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
66.4
0.59
1.2
75
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010896
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011352
24877622 - 24966104
88483