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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24932864_24940956_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
24932864 - 24940956
Intron Length:
8093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCC
5'SS Class:
strong_major
3'SS Sequence:
TATATTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTCATTATAT
Flanking Amino Acid:
QAGMATPALTRFGSDELRKQ
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
77.7
31.1
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
76.3
0.59
1
70
41
Minor 5ss
41.5
-0.9
2.7
54.2
42.9
Minor BPS
62.9
0.48
2
86.88
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010896
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011352
24877622 - 24966104
88483