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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24941064_24946082_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24941064 - 24946082
Intron Length:
5019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTGAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATGTTTTGAAAT
Flanking Amino Acid:
SEAGAGSDVANIKTTAVKKG
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83
23.8
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
66
0.36
1.1
63
42.3
Minor 5ss
41.2
-1
2.8
49.4
41.3
Minor BPS
56.5
0.28
1.5
71.99
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010896
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011352
24877622 - 24966104
88483