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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24946251_24951319_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24946251 - 24951319
Intron Length:
5069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATAACA
5'SS Class:
major
3'SS Sequence:
TGTTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTATTATTAAAT
Flanking Amino Acid:
SLICLPMNLHGIHIAKKIDK
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
69
35.2
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
34
-1.8
2.9
39
40
Minor BPS
65.7
0.57
1.7
83.39
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010896
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011352
24877622 - 24966104
88483