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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_24958620_24958763_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
24958620 - 24958763
Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CATCATTTTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTCATCATT
Flanking Amino Acid:
LLRSLLYRTVALYVEGNDVT
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
100
1.24
0.5
100
0
Major PPT
76
0.59
0.8
73.3
36.4
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
58.3
0.34
2
84.17
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010896
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011352
24877622 - 24966104
88483