About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2498591_2498666_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2498591 - 2498666
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACGGGG
5'SS Class:
major
3'SS Sequence:
CCTGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
CAGCTCTGACCT
Flanking Amino Acid:
SSSSSPDRDERHHRRKAQER
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.2
58.7
46.2
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
72
0.5
0.8
65.4
30.4
Minor 5ss
34.2
-1.8
3.6
46.8
48.5
Minor BPS
46.4
-0.1
1.7
58.88
44.1

Associated Gene:

Gene:
C1orf35
Ensembl Gene ID:
ENSAPLG00000004460
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026562
2497937 - 2500120
2184
ENSAPLT00000020472
2497937 - 2501244
3308
ENSAPLT00000004588
2496662 - 2500135
3474