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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2499332_2499449_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2499332 - 2499449
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCACC
5'SS Class:
major
3'SS Sequence:
CTTCCGTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTTTTATCA
Flanking Amino Acid:
VDRVVGLGSSSGSAGRVMLS
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
65.8
40.2
Major BPS
100
1.24
0.5
100
0
Major PPT
73.9
0.54
0.8
65
36.3
Minor 5ss
33.8
-1.8
3.1
43.2
44.2
Minor BPS
66.1
0.5
1.5
75.42
36.1

Associated Gene:

Gene:
C1orf35
Ensembl Gene ID:
ENSAPLG00000004460
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026562
2497937 - 2500120
2184
ENSAPLT00000020472
2497937 - 2501244
3308
ENSAPLT00000004588
2496662 - 2500135
3474