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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2499533_2499639_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2499533 - 2499639
Intron Length:
107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGGGAT
U12 Branch Point Sequence:
GGACACACGACT
Flanking Amino Acid:
KRQPTGLSKEDLAEVCKRDG
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
56.3
0.16
1.6
57.1
49.4
Major PPT
79.6
0.67
0.7
73.3
24.9
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
40.8
-0.6
1.9
54.26
40

Associated Gene:

Gene:
C1orf35
Ensembl Gene ID:
ENSAPLG00000004460
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020472
2497937 - 2501244
3308
ENSAPLT00000004588
2496662 - 2500135
3474
ENSAPLT00000026562
2497937 - 2500120
2184