About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2499686_2499779_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2499686 - 2499779
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTGAGTTCC
5'SS Class:
major
3'SS Sequence:
TTTTTTGTCGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCAGCAC
U12 Branch Point Sequence:
CCCCCCAGCACC
Flanking Amino Acid:
LAEQEAMMAALGYKNVKRQP
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.2
35.2
Major BPS
41.5
-0.5
1.3
43
37.8
Major PPT
83.5
0.75
0.8
80.8
31.2
Minor 5ss
38.9
-1.2
2.9
55
42.2
Minor BPS
40.3
-0.7
2
45.21
43

Associated Gene:

Gene:
C1orf35
Ensembl Gene ID:
ENSAPLG00000004460
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026562
2497937 - 2500120
2184
ENSAPLT00000020472
2497937 - 2501244
3308
ENSAPLT00000004588
2496662 - 2500135
3474