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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2499931_2500026_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2499931 - 2500026
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CCCATACTAATT
Flanking Amino Acid:
KTDKQRENYLGNSLMAPVGR
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
76.9
38.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
73
0.52
0.9
66.4
35.7
Minor 5ss
36.4
-1.5
3.3
43.8
43.8
Minor BPS
42.7
-0.4
1.8
53.48
42.3

Associated Gene:

Gene:
C1orf35
Ensembl Gene ID:
ENSAPLG00000004460
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020472
2497937 - 2501244
3308
ENSAPLT00000004588
2496662 - 2500135
3474