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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2500937_2501072_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
2500937 - 2501072
Intron Length:
136

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGCGC
5'SS Class:
major
3'SS Sequence:
TTTTTCCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
CACTTTTTAATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
60.5
44.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
90.6
0.91
0.6
85.8
21.3
Minor 5ss
31.2
-2.1
3.3
38.8
40.9
Minor BPS
59.1
0.15
1.4
55
41.4

Associated Gene:

Gene:
C1orf35
Ensembl Gene ID:
ENSAPLG00000004460
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020472
2497937 - 2501244
3308
Gene:
Ensembl Gene ID:
ENSAPLG00000027242
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033912
2500542 - 2503124
2583