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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2501245_2501502_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2501245 - 2501502
Intron Length:
258

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGTT
5'SS Class:
major
3'SS Sequence:
TTTATCTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCTTTAT
U12 Branch Point Sequence:
TCCCCTTTATCT
Flanking Amino Acid:
RLRGGGVWGHGLVPPRCLHT
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.66
1
73
38.2
Major BPS
71.5
0.54
1.1
63.3
42.8
Major PPT
81.5
0.71
0.8
73.8
36.7
Minor 5ss
29.3
-2.4
3.7
38
46.9
Minor BPS
59.6
0.38
1.6
72.72
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027242
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033912
2500542 - 2503124
2583