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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2501938_2505302_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2501938 - 2505302
Intron Length:
3365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGGGGG
5'SS Class:
major
3'SS Sequence:
TGTCTCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAG
U12 Branch Point Sequence:
TTTTTTTTGTCT
Flanking Amino Acid:
LRGAFGRAAAAMQGPRPVVL
Intron Amino Acid Position:
16

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1.1
54.8
44.4
Major BPS
70.6
0.51
1.5
77.9
34.9
Major PPT
85.2
0.79
0.8
77
37.2
Minor 5ss
22.7
-3.1
3.2
20
37.8
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
GUK1
Ensembl Gene ID:
ENSAPLG00000004222
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047842
2501892 - 2511223
9332
ENSAPLT00000043023
2501892 - 2511223
9332