About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2505417_2506649_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2505417 - 2506649
Intron Length:
1233

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
CCGTTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TCAGCCTGCACA
Flanking Amino Acid:
YENIFGFSVSHTTRQPRPGE
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.3
72.6
38.9
Major BPS
79
0.72
1
80.3
31.7
Major PPT
81.8
0.72
0.8
76.3
32.3
Minor 5ss
36.7
-1.5
2.9
50.4
39.3
Minor BPS
48.2
-0.1
2
60.79
45

Associated Gene:

Gene:
GUK1
Ensembl Gene ID:
ENSAPLG00000004222
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047842
2501892 - 2511223
9332
ENSAPLT00000004355
2505303 - 2511223
5921