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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2505417_2507471_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2505417 - 2507471
Intron Length:
2055

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTGTCCCATCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTGTCCCATCC
Flanking Amino Acid:
YENIFGFSVSHYHFVTREEM
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.3
72.6
38.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
75.3
0.57
0.9
67
39.5
Minor 5ss
36.7
-1.5
2.9
50.4
39.3
Minor BPS
44.6
-0.4
2.1
62.78
42.8

Associated Gene:

Gene:
GUK1
Ensembl Gene ID:
ENSAPLG00000004222
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043023
2501892 - 2511223
9332