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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_2507569_2509028_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2507569 - 2509028
Intron Length:
1460

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCTGTCCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
AGGCTCTGACCC
Flanking Amino Acid:
AEFSGNMYGTSKAAVQAVQA
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.4
36.9
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
77.1
0.61
0.8
68.8
37.1
Minor 5ss
42.7
-0.8
3.2
57.8
47.2
Minor BPS
45.8
-0.3
1.7
51.62
39

Associated Gene:

Gene:
GUK1
Ensembl Gene ID:
ENSAPLG00000004222
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047842
2501892 - 2511223
9332
ENSAPLT00000043023
2501892 - 2511223
9332
ENSAPLT00000004355
2505303 - 2511223
5921